About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20007RIBONUCLEASE
Paelopatides20008ZINC/IRON TRANSPORTER
Paelopatides20009ZINC/IRON TRANSPORTER
Paelopatides20010MYOSIN LIGHT CHAIN 1, 3
Paelopatides20011-
Paelopatides20012UNCHARACTERIZED
Paelopatides20013REVERSE TRANSCRIPTASE
Paelopatides20015-
Paelopatides20018-
Paelopatides20019-
Paelopatides20020EPM2A-INTERACTING PROTEIN 1
Paelopatides20021GAG-RELATED PROTEIN
Paelopatides20022-
Paelopatides20023DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides20024RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides20025RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides20026TRANSPOSON
Paelopatides20027-
Paelopatides20028ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides20029PROTEIN CBG10425
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