About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19898PROTEIN CBG26694
Paelopatides19900ACYL-COA DESATURASE
Paelopatides19901ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19902ACYL-COA DESATURASE
Paelopatides19903ACROSIN-RELATED
Paelopatides19904COILED-COIL ALPHA-HELICAL ROD PROTEIN 1
Paelopatides19905PROTEIN DD3-3
Paelopatides19906REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19907-
Paelopatides19910ATP-BINDING CASSETTE SUB-FAMILY B
Paelopatides19911-
Paelopatides19912-
Paelopatides19913-
Paelopatides19914RETROTRANSPOSON
Paelopatides19915RETROTRANSPOSON
Paelopatides19917REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19918FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides19919-
Paelopatides19920FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides19921GAG-RELATED PROTEIN
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