About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20111REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20112-
Paelopatides20113NETRIN RECEPTOR UNC5
Paelopatides20114ENDONUCLEASE-RELATED
Paelopatides20115PHOSPHATASE WITH HOMOLOGY TO TENSIN
Paelopatides20116-
Paelopatides20117-
Paelopatides20118-
Paelopatides20119ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
Paelopatides20120-
Paelopatides20121REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20122DYNACTIN P62 SUBUNIT
Paelopatides20123NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED
Paelopatides20124DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides20125-
Paelopatides20126RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides20127ENDONUCLEASE
Paelopatides20128L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides20129-
Paelopatides20130PARANEOPLASTIC ANTIGEN
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