About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20131ENDONUCLEASE-RELATED
Paelopatides20132NETRIN RECEPTOR UNC5
Paelopatides20133-
Paelopatides20134DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN
Paelopatides20135-
Paelopatides20136-
Paelopatides20137-
Paelopatides20138-
Paelopatides20139NETRIN RECEPTOR UNC5
Paelopatides20140-
Paelopatides20142CALCIUM-INDEPENDENT PHOSPHOLIPASE A2
Paelopatides20143CALCIUM-INDEPENDENT PHOSPHOLIPASE A2
Paelopatides20144-
Paelopatides20145INTEGRIN BETA SUBUNIT
Paelopatides20148PATCHED-RELATED
Paelopatides20150ENDONUCLEASE
Paelopatides20151GABA-B RECEPTOR
Paelopatides20152L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides20153FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides20155PROTEIN CBG26694
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