About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20156ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides20157-
Paelopatides20158-
Paelopatides20159ENDONUCLEASE-RELATED
Paelopatides20160POL PROTEIN
Paelopatides20161PERIOSTIN-RELATED
Paelopatides20162REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20163ENDONUCLEASE-RELATED
Paelopatides20164ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
Paelopatides20165PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides20166PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides20167ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
Paelopatides20168ENDONUCLEASE-RELATED
Paelopatides20170RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
Paelopatides20171ZINC FINGER PROTEIN
Paelopatides201722-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE
Paelopatides20173-
Paelopatides20174AP ENDONUCLEASE
Paelopatides20175L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides20176-
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