About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20197TETRASPANIN
Paelopatides20198ISOAMYL ACETATE-HYDROLYZING ESTERASE 1
Paelopatides20199-
Paelopatides20200-
Paelopatides20201LEO1 PROTEIN
Paelopatides20202SCAFFOLD ATTACHMENT FACTOR B-RELATED
Paelopatides20203-
Paelopatides20204REVERSE TRANSCRIPTASES
Paelopatides20205-
Paelopatides20206-
Paelopatides20207PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides20208PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides20209-
Paelopatides20210ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides20211ZGC:195170
Paelopatides20212-
Paelopatides20213NEPHRIN
Paelopatides20215SI:DKEY-16J16.4
Paelopatides20216NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides20217GAG-RELATED PROTEIN
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