About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20238PEROXISOMAL SARCOSINE OXIDASE
Paelopatides20239-
Paelopatides20240ZINC FINGER PROTEIN ZIC AND GLI
Paelopatides20241DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides20242NETRIN RECEPTOR UNC5
Paelopatides20243-
Paelopatides20244TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides20245-
Paelopatides20246BUCENTAUR RELATED
Paelopatides20247REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20248-
Paelopatides20249RETROTRANSPOSON
Paelopatides20250RETROTRANSPOSON
Paelopatides20251PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides20252PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides20253-
Paelopatides20254CWF19, CELL CYCLE CONTROL PROTEIN
Paelopatides20255ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides20256-
Paelopatides20257TETRASPANIN
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