About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21166PROTEIN CBG03580
Paelopatides21167REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21168MACROGLOBULIN / COMPLEMENT
Paelopatides21169-
Paelopatides21170COPINE
Paelopatides21171PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides21172-
Paelopatides21173REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21174CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides21175GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides21176REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21177GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides21178-
Paelopatides21179FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides21180GAG-RELATED PROTEIN
Paelopatides21181PROTEIN CBG26694
Paelopatides21182PROTEIN CBG26694
Paelopatides21183ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21184-
Paelopatides21185SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER
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