About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26912ENDONUCLEASE-RELATED
Paelopatides26915PROTEIN CBG26694
Paelopatides26916-
Paelopatides26917-
Paelopatides26918REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26919FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides26920RNF121 PROTEIN
Paelopatides26921APPLE DOMAIN-CONTAINING PROTEIN
Paelopatides26923PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides26924-
Paelopatides26925DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
Paelopatides26926-
Paelopatides26927-
Paelopatides26928-
Paelopatides26929ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 9-RELATED
Paelopatides26930HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED
Paelopatides26931UNCHARACTERIZED
Paelopatides26932L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides26933-
Paelopatides26934-
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