About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26956-
Paelopatides26957-
Paelopatides26958-
Paelopatides26959ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides26960SI:CH211-196P9.1-RELATED
Paelopatides26961CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides26962-
Paelopatides26963ENZYMATIC POLYPROTEIN-RELATED
Paelopatides26964TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides26965NUCLEOSIDE DIPHOSPHATE KINASE
Paelopatides2696615-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides26968SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides26970PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
Paelopatides26971PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
Paelopatides26972LEUCINE AMINOPEPTIDASE-RELATED
Paelopatides26973MEDIATOR COMPLEX SUBUNIT 28
Paelopatides26974FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED
Paelopatides26975-
Paelopatides26976-
Paelopatides26977CXC DOMAIN-CONTAINING PROTEIN-RELATED
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