About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33756SERYL-TRNA SYNTHETASE
Paelopatides33757ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE
Paelopatides33758ENDONUCLEASE-RELATED
Paelopatides33759POL PROTEIN
Paelopatides33760ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE
Paelopatides33761MRNA EXPORT FACTOR AND BUB3
Paelopatides33762PROTEASOME SUBUNIT ALPHA/BETA
Paelopatides33763-
Paelopatides33764RIBOSOMAL PROTEIN S6 KINASE
Paelopatides33765C2 DOMAIN-CONTAINING
Paelopatides33766IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
Paelopatides33767WD REPEAT PROTEIN
Paelopatides33768-
Paelopatides33770-
Paelopatides33771DYNACTIN 1-RELATED MICROTUBULE-BINDING
Paelopatides33772STRIATIN
Paelopatides33773STRIATIN
Paelopatides33774ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
Paelopatides33775LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
Paelopatides33776PROTEIN, PUTATIVE-RELATED
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