About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33777UNCHARACTERIZED
Paelopatides33779HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Paelopatides33780RETROTRANSPOSON
Paelopatides33781PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides33782LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides33783ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED
Paelopatides33784TRYPTOPHANYL-TRNA SYNTHETASE
Paelopatides33785CAMK FAMILY PROTEIN KINASE
Paelopatides33786-
Paelopatides33787CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides33788-
Paelopatides33789SI:CH211-196P9.1-RELATED
Paelopatides33790INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides33791-
Paelopatides33792ENDONUCLEASE-RELATED
Paelopatides33793PROTEIN CBG26694
Paelopatides33794RAP GTPASE-ACTIVATING PROTEIN
Paelopatides33795RAP GTPASE-ACTIVATING PROTEIN
Paelopatides33796RAP GTPASE-ACTIVATING PROTEIN
Paelopatides33797-
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