About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34613RETROTRANSPOSON
Paelopatides34614ENDONUCLEASE-RELATED
Paelopatides34615ACETYL-COA CARBOXYLASE, ISOFORM A
Paelopatides34616-
Paelopatides34617ACETYL-COA CARBOXYLASE, ISOFORM A
Paelopatides34618TRANSMEMBRANE PROTEIN
Paelopatides34619ACETYL-COA CARBOXYLASE, ISOFORM A
Paelopatides34620PROTEIN DISULFIDE-ISOMERASE TMX3
Paelopatides34621PREFOLDIN SUBUNIT 4
Paelopatides34622-
Paelopatides34623LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
Paelopatides34624DNA TOPOISOMERASE I
Paelopatides34625-
Paelopatides34626-
Paelopatides34627-
Paelopatides34628MALE-SPECIFIC LETHAL-1 PROTEIN
Paelopatides34629SMALL UBIQUITIN-RELATED MODIFIER
Paelopatides34630B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides34631OPSIN
Paelopatides34632-
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