About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34633PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides34634GLUCOSAMINE-6-PHOSPHATE ISOMERASE
Paelopatides34635-
Paelopatides34636-
Paelopatides34637-
Paelopatides34638-
Paelopatides34639ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides34640SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED
Paelopatides34641COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6
Paelopatides34642CARBOHYDRATE SULFOTRANSFERASE
Paelopatides34643RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED
Paelopatides34644PHOSPHATASE WITH HOMOLOGY TO TENSIN
Paelopatides34645-
Paelopatides34646MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
Paelopatides34647MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
Paelopatides34648UNCHARACTERIZED
Paelopatides34649NUCLEAR HORMONE RECEPTOR
Paelopatides34650-
Paelopatides34651-
Paelopatides34652-
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