About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34673MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
Paelopatides34674KIAA0586 PROTEIN
Paelopatides34675MYELIN TRANSCRIPTION FACTOR 1-RELATED
Paelopatides34676-
Paelopatides34677TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides34678-
Paelopatides34679-
Paelopatides34680-
Paelopatides34681SULFURTRANSFERASE-RELATED
Paelopatides34682DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides34683DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides34684COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
Paelopatides34685EXTRA SPINDLE POLES 1-RELATED
Paelopatides34686-
Paelopatides34687-
Paelopatides34688PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides34689ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides34690N-ACETYLGALACTOSAMINYLTRANSFERASE
Paelopatides34691TESTIS-EXPRESSED PROTEIN 47
Paelopatides34692INSULIN-LIKE PEPTIDE 2-RELATED
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