About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34713-
Paelopatides34714-
Paelopatides34715HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Paelopatides34716UNCHARACTERIZED
Paelopatides34717-
Paelopatides34718HEDGEHOG-INTERACTING PROTEIN
Paelopatides34719GLYCOPROTEIN HORMONE RECEPTOR
Paelopatides34720LIN-9
Paelopatides34721THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9
Paelopatides34722-
Paelopatides34723-
Paelopatides34724THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9
Paelopatides34725LIN-9
Paelopatides34726REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34727-
Paelopatides34728RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
Paelopatides34729-
Paelopatides34730DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
Paelopatides34731NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1
Paelopatides34732PROTEIN CBG26694
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