About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34733-
Paelopatides34735BONUS, ISOFORM C-RELATED
Paelopatides34736ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides34739RIBOSOMAL PROTEIN S6 KINASE
Paelopatides34740ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2
Paelopatides34741-
Paelopatides34742DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
Paelopatides34743DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
Paelopatides34744DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
Paelopatides34745-
Paelopatides34746SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides34747REVERSE TRANSCRIPTASES
Paelopatides34748MULTICOPPER OXIDASE-RELATED
Paelopatides34749-
Paelopatides34750PROTEIN TAG-278-RELATED
Paelopatides34751-
Paelopatides34752TYROSINE-PROTEIN PHOSPHATASE
Paelopatides34753SOLUTE CARRIER FAMILY 35
Paelopatides34754PROTEIN SERAC1
Paelopatides34755-
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