About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35735PROTEIN CBG26694
Paelopatides35736PROTEIN CBG26694
Paelopatides35737PROTEIN CBG26694
Paelopatides35738ENOYL-COA HYDRATASE-RELATED
Paelopatides35739CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides35740ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1
Paelopatides35741ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1
Paelopatides35742PROTEIN CBG26694
Paelopatides35743THIOREDOXIN-LIKE PROTEN 4A, 4B
Paelopatides35744PEPTIDASE
Paelopatides35745UNCHARACTERIZED
Paelopatides35746TRANSMEMBRANE PROTEIN 168
Paelopatides35747TRANSMEMBRANE PROTEIN 168
Paelopatides35748-
Paelopatides35749-
Paelopatides35750REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35751COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
Paelopatides35752POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3
Paelopatides35753POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3
Paelopatides35754STABILIZER OF AXONEMAL MICROTUBULES 2
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