About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35844-
Paelopatides35845PROTEIN, PUTATIVE-RELATED
Paelopatides35846DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides35847DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides35848SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides35849SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides35850-
Paelopatides35851PHENYLALANYL-TRNA SYNTHETASE
Paelopatides35852SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides35853SI:CH211-108C17.2-RELATED-RELATED
Paelopatides35854CALCIUM BINDING PROTEIN
Paelopatides35855TRANSMEMBRANE PROTEIN
Paelopatides35856-
Paelopatides35857-
Paelopatides35858GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
Paelopatides35859-
Paelopatides35860-
Paelopatides35861DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT
Paelopatides35862DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN
Paelopatides35863ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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