About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35885PROTEIN CBG26694
Paelopatides35886FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides35887REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35888REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35889REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35890-
Paelopatides35891PROTEIN CBG16200
Paelopatides35892-
Paelopatides35893PROTEIN CBG16200
Paelopatides35894YIPPEE DOMAIN-CONTAINING PROTEIN
Paelopatides35895HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Paelopatides35896LUPUS LA PROTEIN-RELATED
Paelopatides35897-
Paelopatides35898-
Paelopatides35899PEPTIDOGLYCAN RECOGNITION PROTEIN
Paelopatides35900PEPTIDOGLYCAN RECOGNITION PROTEIN
Paelopatides35901-
Paelopatides35902ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides35903ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides35904REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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