About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35905ARFAPTIN-RELATED
Paelopatides35906-
Paelopatides35909PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
Paelopatides35910PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
Paelopatides35911-
Paelopatides35912LARGE PROLINE-RICH PROTEIN BAG6
Paelopatides35913HOMEOBOX PROTEIN
Paelopatides35914S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE
Paelopatides35915-
Paelopatides35916-
Paelopatides35917ATP7, ISOFORM B
Paelopatides35918PROTEASOME MATURATION PROTEIN UMP1
Paelopatides35919ATP-CITRATE SYNTHASE
Paelopatides35920-
Paelopatides35921COMM DOMAIN-CONTAINING PROTEIN 3
Paelopatides35922REVERSE TRANSCRIPTASES
Paelopatides35923TESTIS-EXPRESSED PROTEIN 36
Paelopatides35924BONUS, ISOFORM C-RELATED
Paelopatides35926ARYLSULFATASE
Paelopatides35927-
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