About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35928TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides35929LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN
Paelopatides35930TRANSCRIPTIONAL ADAPTER 1
Paelopatides35931PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN
Paelopatides35932ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides35933REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35934NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides35935CEREBRAL PROTEIN-11-RELATED
Paelopatides35936-
Paelopatides35937GLUTATHIONE S-TRANSFERASE
Paelopatides35938-
Paelopatides35939-
Paelopatides35940PROTEIN PHOSPHATASE
Paelopatides35941NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4
Paelopatides35942OUTER SEGMENT 5
Paelopatides35943REVERSE TRANSCRIPTASES
Paelopatides35944RHOMBOID-RELATED PROTEIN
Paelopatides35945OS02G0202900 PROTEIN
Paelopatides35946KELCH PROTEIN
Paelopatides35947-
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