About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38094CYTOCHROME P450 FAMILY 3
Paelopatides38095-
Paelopatides38096-
Paelopatides38097NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides38098-
Paelopatides38099SLR5058 PROTEIN
Paelopatides38100NETRIN RECEPTOR UNC5
Paelopatides38101-
Paelopatides38102-
Paelopatides38103-
Paelopatides38104G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
Paelopatides38105-
Paelopatides38106-
Paelopatides38107RETROTRANSPOSON
Paelopatides38108PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides38109ZINC FINGER PROTEIN
Paelopatides38110-
Paelopatides38111TETRASPANIN
Paelopatides38112TETRASPANIN
Paelopatides38113EPM2A-INTERACTING PROTEIN 1
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