About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38051PROTEIN CBG26694
Paelopatides38052E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
Paelopatides38053DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides38054DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides38055-
Paelopatides38056-
Paelopatides38057TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5
Paelopatides38058-
Paelopatides38059F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides38060BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides38061USE1-LIKE PROTEIN
Paelopatides38062GLYCOSIDASE FAMILY 31
Paelopatides38063PARANEOPLASTIC ANTIGEN
Paelopatides38064-
Paelopatides38065G-PROTEIN COUPLED RECEPTOR
Paelopatides38066-
Paelopatides38067F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
Paelopatides38068TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Paelopatides38069SARCOMA ANTIGEN NY-SAR-95-RELATED
Paelopatides38070SARCOMA ANTIGEN NY-SAR-95-RELATED
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