About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38071-
Paelopatides38072HISTONE DEACETYLASE HDAC1-RELATED
Paelopatides38074PROTEIN CBG26694
Paelopatides38075EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides38076REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38077SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides38078UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides38079FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides38080FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides38081FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides38082PROPERDIN
Paelopatides38083FI04643P-RELATED
Paelopatides38084-
Paelopatides38085-
Paelopatides38086-
Paelopatides38087-
Paelopatides38088ACYL-COA DEHYDROGENASE
Paelopatides38091FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides38092-
Paelopatides38093ELONGATION FACTOR TU-RELATED
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