About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38114-
Paelopatides38115PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides38116-
Paelopatides38117ARYLSULFATASE FAMILY MEMBER
Paelopatides38118DESTABILASE-RELATED
Paelopatides38119AQUAPORIN OR AQUAGLYCEROPORIN RELATED
Paelopatides38120ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38121ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38122REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38123SIALATE O-ACETYLESTERASE
Paelopatides38124RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Paelopatides38125DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED
Paelopatides38126PUTATIVE HOMEODOMAIN TRANSCRIPTION FACTOR PHTF
Paelopatides38127-
Paelopatides38128-
Paelopatides38129-
Paelopatides38130PUTATIVE HOMEODOMAIN TRANSCRIPTION FACTOR PHTF
Paelopatides38131ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Paelopatides38132-
Paelopatides38133REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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