About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38908ACTIN
Paelopatides38909ACTIN
Paelopatides38910NOTCH LIGAND FAMILY MEMBER
Paelopatides38911-
Paelopatides38912PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides38913TRANSPOSON
Paelopatides38914PROTEIN CBG26694
Paelopatides38915PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides38916-
Paelopatides38917REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38918REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38919-
Paelopatides38921REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38922BIS(5'-ADENOSYL)-TRIPHOSPHATASE
Paelopatides38923U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
Paelopatides38924-
Paelopatides38925PROTEIN ABHD14B-LIKE
Paelopatides38926PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
Paelopatides38927PROTEIN CBG26694
Paelopatides38928ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
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