About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38949ENZYMATIC POLYPROTEIN-RELATED
Paelopatides38950PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides38951SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides38952FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides38953-
Paelopatides38954-
Paelopatides38955DNA POLYMERASE I
Paelopatides38956KINESIN-LIKE PROTEIN KLP-3
Paelopatides38958MALE FERTILITY FACTOR KL5
Paelopatides38959-
Paelopatides38960ATP SYNTHASE DELTA CHAIN
Paelopatides38961RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
Paelopatides38962EH DOMAIN
Paelopatides38963MITOCHONDRIAL RIBOSOMAL PROTEIN S31
Paelopatides38964COILED-COIL DOMAIN-CONTAINING PROTEIN 58
Paelopatides38965IMPORTIN ALPHA
Paelopatides38966GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN
Paelopatides38967UPF0041 BRAIN PROTEIN 44-RELATED
Paelopatides38968NADPH OXIDASE
Paelopatides38969DNA HELICASE RECQ FAMILY MEMBER
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