About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38970CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Paelopatides38971XPA-BINDING PROTEIN 1-RELATED
Paelopatides38972KNIRPS-RELATED PROTEIN-RELATED
Paelopatides38973-
Paelopatides38974UNCHARACTERIZED
Paelopatides38975SI:CH211-196P9.1-RELATED
Paelopatides38976TETRASPANIN
Paelopatides38977-
Paelopatides38978SERUM RESPONSE FACTOR HOMOLOG
Paelopatides38979RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Paelopatides38980MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44
Paelopatides38981MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44
Paelopatides38982-
Paelopatides38983ZGC:101016
Paelopatides38984PROTEIN CBG26694
Paelopatides38985PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides38986NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
Paelopatides38987-
Paelopatides38988COILED-COIL DOMAIN-CONTAINING PROTEIN 180
Paelopatides38989NEUROPEPTIDES RECEPTOR
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