About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40030EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides40031-
Paelopatides40032TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides40033ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides40034BTB/POZ DOMAIN-CONTAINING PROTEIN 16
Paelopatides40035-
Paelopatides40036COILED-COIL DOMAIN-CONTAINING PROTEIN 189
Paelopatides40037-
Paelopatides40038-
Paelopatides40039RETROTRANSPOSON
Paelopatides40040PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides40041RETROTRANSPOSON
Paelopatides40042RETROTRANSPOSON
Paelopatides40043RETROTRANSPOSON
Paelopatides40044TRANSPOSON
Paelopatides40045-
Paelopatides40046-
Paelopatides40047OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides40048-
Paelopatides40049-
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