About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40077CYTOCHROME P450 508A4-RELATED
Paelopatides40078CYTOCHROME P450 508A4-RELATED
Paelopatides40079CYTOCHROME P450 508A4-RELATED
Paelopatides40080OPSIN
Paelopatides40081-
Paelopatides40082SI:CH211-196P9.1-RELATED
Paelopatides40083ENZYMATIC POLYPROTEIN-RELATED
Paelopatides40084PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides40085PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides40086PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides40087MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29
Paelopatides40088-
Paelopatides40089MRNA GUANINE-7- METHYLTRANSFERASE
Paelopatides40090RIBOSOMAL RNA METHYLTRANSFERASE
Paelopatides40091-
Paelopatides40092-
Paelopatides40093CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides40094CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides40095TIRAP
Paelopatides40096REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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