About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40420ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides40421CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides40422-
Paelopatides40423OPSIN
Paelopatides40424SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides40425PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides40426NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides40427GAG-RELATED PROTEIN
Paelopatides40428ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides40429EPM2A-INTERACTING PROTEIN 1
Paelopatides40430EPM2A-INTERACTING PROTEIN 1
Paelopatides40431-
Paelopatides40432REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40433-
Paelopatides40434NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides40435FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides40436REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40437UNCHARACTERIZED
Paelopatides40438-
Paelopatides40439PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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