About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41425-
Paelopatides41426EPM2A-INTERACTING PROTEIN 1
Paelopatides41427-
Paelopatides41428INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides41429CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides41430PROTEIN CBG26694
Paelopatides41431PROTEIN CBG26694
Paelopatides41432PROTEIN CBG26694
Paelopatides41433PRESENILIN
Paelopatides41434-
Paelopatides41435-
Paelopatides41436PRESENILIN
Paelopatides41437-
Paelopatides41438ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER
Paelopatides41439DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides41440ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER
Paelopatides41441-
Paelopatides41442PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
Paelopatides41443GUANINE NUCLEOTIDE EXCHANGE FACTOR
Paelopatides41444BANK1/PIK3AP1 FAMILY MEMBER
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