About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides42961-
Paelopatides42962RAS-RELATED PROTEIN RAB
Paelopatides42963ABC1 FAMILY PROTEIN
Paelopatides42964UBIQUITIN-ACTIVATING ENZYME E1
Paelopatides42965HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides42966PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides42967REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides42968E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED
Paelopatides42969SNARE PROTEINS
Paelopatides42970ENDONUCLEASE-RELATED
Paelopatides42971ENZYMATIC POLYPROTEIN-RELATED
Paelopatides42972TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides42973-
Paelopatides42974FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides42975FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides42976FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides42977FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides42978PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides42979RETROTRANSPOSON
Paelopatides42980-
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