About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43002RETROTRANSPOSON
Paelopatides43003REVERSE TRANSCRIPTASES
Paelopatides43004REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43005ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED
Paelopatides43006ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED
Paelopatides43007-
Paelopatides43008REVERSE TRANSCRIPTASES
Paelopatides43009-
Paelopatides43010TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
Paelopatides43011AIG1-TYPE G DOMAIN-CONTAINING PROTEIN
Paelopatides43013NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides43014THYMIDYLATE KINASE
Paelopatides43015TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides43016-
Paelopatides43017REVERSE TRANSCRIPTASE
Paelopatides43018-
Paelopatides43019F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides43020PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43021PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43022RETROTRANSPOSON
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