About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43212NUCLEAR HORMONE RECEPTOR HR3-RELATED
Paelopatides43213-
Paelopatides43214UBIQUITIN LIGASE E3 ALPHA-RELATED
Paelopatides43215UBIQUITIN LIGASE E3 ALPHA-RELATED
Paelopatides43216-
Paelopatides43217B30.2/SPRY DOMAIN-CONTAINING PROTEIN
Paelopatides43218B30.2/SPRY DOMAIN-CONTAINING PROTEIN
Paelopatides43219RADICAL SAM PROTEINS
Paelopatides43220RADICAL SAM PROTEINS
Paelopatides43221-
Paelopatides43222-
Paelopatides43223-
Paelopatides43224ENDONUCLEASE-RELATED
Paelopatides43225-
Paelopatides43226NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
Paelopatides43227REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43228CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 300
Paelopatides43231DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides43232REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43233MYOTROPHIN
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