About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43758PHD/F-BOX CONTAINING PROTEIN
Paelopatides43759BONUS, ISOFORM C-RELATED
Paelopatides43760BETA1,3-GALACTOSYLTRANSFERASE
Paelopatides43761LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
Paelopatides43762LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
Paelopatides43763-
Paelopatides43764RAS-RELATED PROTEIN RAB
Paelopatides43765UNCHARACTERIZED
Paelopatides43766UNCHARACTERIZED
Paelopatides43767-
Paelopatides4376815-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides43769ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides43770ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Paelopatides43771REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43772-
Paelopatides43773ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides43774ZINC FINGER PROTEIN
Paelopatides43775PR DOMAIN ZINC FINGER PROTEIN
Paelopatides43776-
Paelopatides43777GOLGI INTEGRAL MEMBRANE PROTEIN 4
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