About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43798PROTEIN CBG26694
Paelopatides43799FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43800PUTATIVE-RELATED
Paelopatides43801-
Paelopatides43802RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides43803SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides43804ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides43805PROTEIN CBG20422
Paelopatides43806OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides43807MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER
Paelopatides43808KELCH PROTEIN
Paelopatides43809FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43810TRANSCRIPTION FACTOR CASTOR PROTEIN MING -RELATED
Paelopatides43811TRANSCRIPTION FACTOR CASTOR PROTEIN MING -RELATED
Paelopatides43812TRANSMEMBRANE PROTEIN 107
Paelopatides43813-
Paelopatides43814COATOMER
Paelopatides43815-
Paelopatides43816-
Paelopatides43817T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
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