About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11168REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11169
Clavulariidae_g1117ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11170EXPRESSED PROTEIN
Clavulariidae_g11171PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11172REVERSE TRANSCRIPTASES
Clavulariidae_g11173
Clavulariidae_g11174
Clavulariidae_g11175
Clavulariidae_g11176
Clavulariidae_g11177PROTEIN CBG26694
Clavulariidae_g11178
Clavulariidae_g11179
Clavulariidae_g1118
Clavulariidae_g11180ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g11181ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g11182HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11183HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11184THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g11185THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g11186
Clavulariidae_g11187EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g11188
Clavulariidae_g11189
Clavulariidae_g1119EXPRESSED PROTEIN
Clavulariidae_g11190AGAP001331-PA-RELATED
Clavulariidae_g11191
Clavulariidae_g11192
Clavulariidae_g11193ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11194
Clavulariidae_g11195
Clavulariidae_g11196GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Clavulariidae_g11197ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11198PROTEIN CBG26694
Clavulariidae_g11199PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g112NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g1120
Clavulariidae_g11200ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11201
Clavulariidae_g11202REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11203
Clavulariidae_g11204PROTEIN, PUTATIVE-RELATED
Clavulariidae_g11205
Clavulariidae_g11206-
Clavulariidae_g11207
Clavulariidae_g11208
Clavulariidae_g11209DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1121
Clavulariidae_g11210ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11211PROTEIN CBG26694
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