About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06282L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides06283-
Paelopatides06284L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides06285ACYL-COA THIOESTERASE
Paelopatides06286NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE
Paelopatides06287POLY A POLYMERASE CID PAP -RELATED
Paelopatides06288BONUS, ISOFORM C-RELATED
Paelopatides06289-
Paelopatides06290-
Paelopatides06291-
Paelopatides06292MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides06293PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06294PROTEIN CBG26694
Paelopatides06295GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides06296-
Paelopatides06297THUMP DOMAIN CONTAINING PROTEIN 1-RELATED
Paelopatides06298ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides06299L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides06300APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides06301-
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