About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06261L-ASPARTATE DEHYDROGENASE-RELATED
Paelopatides06262ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE
Paelopatides0626352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides06264-
Paelopatides06265GABA-B RECEPTOR
Paelopatides06266ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06267ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06268MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides06269-
Paelopatides06270RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Paelopatides06271-
Paelopatides06272MATRIX METALLOPROTEINASE
Paelopatides06273ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2
Paelopatides06274ENDONUCLEASE
Paelopatides06275REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06276-
Paelopatides06277RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides06278RETROTRANSPOSON
Paelopatides06279-
Paelopatides06280-
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