About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06322-
Paelopatides06323-
Paelopatides06324-
Paelopatides06325POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP
Paelopatides06326F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06327ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06328REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06329CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06330CYTOCHROME B561-RELATED
Paelopatides06331XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides06332PROTEIN CBG26694
Paelopatides06333ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides06334PROTEIN CBG26694
Paelopatides06335PROTEIN CBG26694
Paelopatides06336-
Paelopatides06337-
Paelopatides06338ELONGATOR COMPLEX PROTEIN 5
Paelopatides06339PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06340-
Paelopatides06341-
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