About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06363ENDONUCLEASE-RELATED
Paelopatides06364POL PROTEIN
Paelopatides06365FI04643P-RELATED
Paelopatides06366POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides06367-
Paelopatides06368PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06369-
Paelopatides06370HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides06371RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides06372ENDONUCLEASE
Paelopatides06373-
Paelopatides06374ENZYMATIC POLYPROTEIN-RELATED
Paelopatides06375-
Paelopatides06376-
Paelopatides06377-
Paelopatides06378GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides06379ORGANIC ANION TRANSPORTER
Paelopatides06380-
Paelopatides06381ORGANIC ANION TRANSPORTER
Paelopatides06382ORGANIC ANION TRANSPORTER
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