About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06423-
Paelopatides06424-
Paelopatides06425AGAP005574-PA
Paelopatides06426SI:CH211-108C17.2-RELATED-RELATED
Paelopatides06427SI:CH211-108C17.2-RELATED-RELATED
Paelopatides06428SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides06429-
Paelopatides06430WD REPEAT-CONTAINING PROTEIN 75
Paelopatides06431ENZYMATIC POLYPROTEIN-RELATED
Paelopatides06432PROTEIN CBG26694
Paelopatides06433-
Paelopatides06434ENDONUCLEASE
Paelopatides06435-
Paelopatides06436CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06437TYROSINE-PROTEIN KINASE
Paelopatides06438CYTOCHROME P450 508A4-RELATED
Paelopatides06439-
Paelopatides06440-
Paelopatides06441RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides06442RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
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