About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06403ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06404XAA-PRO AMINOPEPTIDASE 3
Paelopatides06405-
Paelopatides06406-
Paelopatides06407ATP-DEPENDENT RNA HELICASE
Paelopatides06408OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides06409TRANSLATION INITIATION FACTOR IF-2-RELATED
Paelopatides06410-
Paelopatides0641130S/40S RIBOSOMAL PROTEIN S3
Paelopatides06412FAM11A, B PROTEIN
Paelopatides06413ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06414-
Paelopatides06415-
Paelopatides06416-
Paelopatides06417-
Paelopatides06418-
Paelopatides06419-
Paelopatides06420UNCHARACTERIZED
Paelopatides06421PROTEIN CBG26694
Paelopatides06422-
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