About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06443-
Paelopatides06444L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides06445TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides06446LFA-3
Paelopatides06447ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06448SIGNAL-REGULATORY PROTEIN BETA
Paelopatides06449PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06450PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06451-
Paelopatides06452OS05G0310600 PROTEIN
Paelopatides06453-
Paelopatides06454REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06455TRANSPOSABLE ELEMENT-RELATED
Paelopatides06456TRANSPOSASE, PUTATIVE-RELATED
Paelopatides06457-
Paelopatides06458FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides06459FIBRINOGEN ALPHA CHAIN
Paelopatides06460TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides06461REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06462SHC TRANSFORMING PROTEIN
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