About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06587TRANSPOSON
Paelopatides06588-
Paelopatides06589REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06590INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides06591-
Paelopatides06592ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN
Paelopatides06593HOMEOBOX PROTEIN HHEX
Paelopatides06594STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides06595TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides06596ADP-RIBOSYLGLYCOHYDROLASE
Paelopatides06599POL PROTEIN
Paelopatides06600-
Paelopatides06601PROTEIN, PUTATIVE-RELATED
Paelopatides06602BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides06603CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06604-
Paelopatides06605ENGULFMENT AND CELL MOTILITY
Paelopatides06606-
Paelopatides06607ACTIN BUNDLING/MISSING IN METASTASIS-RELATED
Paelopatides06608REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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