About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06567UNCHARACTERIZED
Paelopatides06568ZINC FINGER, RING/FYVE/PHD-TYPE
Paelopatides06569ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06570HISTONE ACETYLTRANSFERASE-RELATED
Paelopatides06571-
Paelopatides06572RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Paelopatides06573-
Paelopatides06574-
Paelopatides06575DNA POLYMERASE
Paelopatides06576-
Paelopatides06577FUN14 DOMAIN CONTAINING
Paelopatides06578ENDONUCLEASE
Paelopatides06579-
Paelopatides06580-
Paelopatides06581PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
Paelopatides06582PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED
Paelopatides06583PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06584REVERSE TRANSCRIPTASES
Paelopatides06585FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides06586-
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