About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06523-
Paelopatides06524-
Paelopatides06525-
Paelopatides06526HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides06527RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides06528ENVOPLAKIN
Paelopatides06529ENVOPLAKIN
Paelopatides06530SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Paelopatides06531SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Paelopatides06532-
Paelopatides06533SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Paelopatides06534SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Paelopatides06535-
Paelopatides06536IMMUNOGLOBULIN
Paelopatides06537PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides06538HOMEOBOX PROTEIN NKX
Paelopatides06539-
Paelopatides06540ZINC FINGER PROTEIN
Paelopatides06541PROTEIN CBG26694
Paelopatides06542PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
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