About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07764TRANSPOSABLE ELEMENT-RELATED
Paelopatides07765TRANSPOSABLE ELEMENT-RELATED
Paelopatides07766PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED
Paelopatides07767REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07768-
Paelopatides07769PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED
Paelopatides07770FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED
Paelopatides07771FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED
Paelopatides07772-
Paelopatides07773DUAL OXIDASE 2
Paelopatides07774OXIDASE/PEROXIDASE
Paelopatides07775NADPH OXIDASE
Paelopatides07776SKI ONCOGENE-RELATED
Paelopatides07777-
Paelopatides07778-
Paelopatides07779-
Paelopatides07781REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07782POL PROTEIN
Paelopatides07783PHOSPHOLIPASE A2 FAMILY MEMBER
Paelopatides07784ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
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